Calc

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(Functional Range)
(Prerequisites)
 
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=Functional Range=
 
=Functional Range=
 
Use remote computing @calc for medium large operations. For small Operations use your laptop, for large ones Ivana's cluster.
 
Use remote computing @calc for medium large operations. For small Operations use your laptop, for large ones Ivana's cluster.
Coordinate with your colleagues, and use gkrellm to monitor system resources.
+
Coordinate with your colleagues, and use gkrellm to monitor system resources. (30% virtualisation-overhead might be indicated)
 +
=Backup=
 +
Your data is your responsibility, since this server is '''not''' part of a BACKUP routine. Transfer your data (e.g. code and time-series) back onto your laptop or onto your share of our ''Institutsserver''.)
  
 
=Access=
 
=Access=
==Direct Access==
+
==via Direct Access==
via ssh from your client machine within VLAN-168 (with an IP: 131.130.96.Z).
+
 
+
 
===Prerequisites===
 
===Prerequisites===
 +
# [https://zid.univie.ac.at/en/services/services-from-a-z/v/vpn-virtual-private-network/ VPN] client (no need within VLAN-168)
 
# ssh client
 
# ssh client
# X server
+
# X client
  
 
an X server is needed if graphics shall be displayed, staying in text mode you would not need it.
 
an X server is needed if graphics shall be displayed, staying in text mode you would not need it.
Line 18: Line 19:
 
* login at the remote host calc.isor.univie.ac.at
 
* login at the remote host calc.isor.univie.ac.at
 
  ssh -X <remote_user>@calc.isor.univie.ac.at
 
  ssh -X <remote_user>@calc.isor.univie.ac.at
 +
the first time you might want to check the host-keys:
 +
a6:b2:e6:b2:69:79:03:2d:dc:a8:32:f3:9d:36:b1:e3  (ECDSA)
 +
31:9a:05:c8:02:83:58:da:4e:3a:92:36:8c:89:29:c4  (RSA)
 
* make your data available  
 
* make your data available  
** either by running a script to connect your lucky-data
+
** either by running a script to connect your vladimir-data
  mount_lucky <lucky_user>
+
(only if you have got an account at the ''institutsserver'', i.e. being staff)
 +
  mount_vladimir <vladimir_user>
 
:* or some secure-copy transfers
 
:* or some secure-copy transfers
 
  scp -r <my_local_data> <remote_user>@calc.isor.univie.ac.at
 
  scp -r <my_local_data> <remote_user>@calc.isor.univie.ac.at
Line 27: Line 32:
 
*transfer your outcome and delete your original data (if you don't use it any more)
 
*transfer your outcome and delete your original data (if you don't use it any more)
  
or disconnect from lucky
+
or disconnect from vladimir
  umount-lucky
+
  umount_vladimir
  
== Virtual Desktop==
+
== via Virtual Desktop==
 
[[File:VirtualDesktop.gif|right|frameless|100px|caption]]
 
[[File:VirtualDesktop.gif|right|frameless|100px|caption]]
you can use a virtual desktop to login there first, then access the calc server.
+
you can use a virtual desktop to login the calc server.
 +
#'''F5''' for connecting to the UNI-VPN
 +
#'''vncviewer''' to connect to your Desktop
 +
== via sftp and WEB-R==
 +
# '''F5''' for connecting to the UNI-VPN
 +
# '''sftp''' (e.g. FileZilla) to upload your workspace
 +
# '''http://calc.vdc.ac:8787''' to do your '''R'''
  
 
===Prerequisites===
 
===Prerequisites===
 +
* [https://zid.univie.ac.at/en/services/services-from-a-z/v/vpn-virtual-private-network/ VPN] client (can be omitted within VLAN-168)
 
* vnc-client like tigervnc (former tight-vnc)
 
* vnc-client like tigervnc (former tight-vnc)
 
  yum install tigervnc ''or'' apt-get install tigervnc-viewer
 
  yum install tigervnc ''or'' apt-get install tigervnc-viewer
Line 41: Line 53:
 
* java enabled web-browser to run an unsigned applet (which normally causes troubles)
 
* java enabled web-browser to run an unsigned applet (which normally causes troubles)
  
===work-flow===
+
===work-flow===  
connecting through a virtual deskstop another username/password pair is necessary. Your username is mapped to the <Display> number, your password is just the same.
+
# Establish a [https://zid.univie.ac.at/en/services/services-from-a-z/v/vpn-virtual-private-network/ VPN tunnel] to begin with.
start your vnc-client on your laptop
+
#: Make sure to be within the VPN university subnet.
  vncviewer 131.130.97.100:<Display>
+
# start your vnc-client
 +
(Technically, connecting through a virtual desktop another username/password pair would be necessary.) Your username is mapped to the port:=5900+<Display> number, your password is just the same anyway.)
 +
  vncviewer 131.130.97.100:port
 
or - even better tunnel the session through ssh
 
or - even better tunnel the session through ssh
  vncviewer -via <remote-user>@calc.isor.univie.ac.at localhost:<Display>
+
  vncviewer -via <remote-user>@calc.isor.univie.ac.at localhost:port
 
Best to use the Full-Screen-Mode, note the keys how to escape, e.g. '''<Strg> + <Alt> + <Shift> + <F>'''  
 
Best to use the Full-Screen-Mode, note the keys how to escape, e.g. '''<Strg> + <Alt> + <Shift> + <F>'''  
 
Don't forget to close the vncviewer before opening it at another host to get the geometry-settings right. Some viewers like '''viagre''' disable sending special keys by default ('''<Strg>+<Q>''' in this case). Make sure to enable them, just not to get locked out in FullScreen mode.
 
Don't forget to close the vncviewer before opening it at another host to get the geometry-settings right. Some viewers like '''viagre''' disable sending special keys by default ('''<Strg>+<Q>''' in this case). Make sure to enable them, just not to get locked out in FullScreen mode.
Line 53: Line 67:
 
  http://calc.isor.univie.ac.at:Port
 
  http://calc.isor.univie.ac.at:Port
  
Use your Virtual Linux Desktop's terminal (e.g. gnome-terminal) and continue as described in 1). Start your calculation and close the viewer. On any machine in VLAN-168 you can re-open a viewer and continue.
+
Use your Virtual Linux Desktop's terminal (e.g. gnome-terminal) and continue as described in 1). Start your calculation and close the viewer. Within the VPN uni-subnet or VLAN-168 you can re-open a viewer and continue.
 +
===Bugs===
 +
Avoid switching to full-screen, because vnc might get into troubles.
 +
 
 +
==Applications==
 +
===Matlab===
 +
Open a terminal via e.g. '''Application > Favorites > Terminal'''. At the command-prompt put in '''matlab'''. After the licensing server is asked for authorization the GUI starts up. Don't close this terminal, since it's the controlling terminal for Matlab. Alternatively press '''<Alt>+<F2>''' and fill in matlab. You can also use matlab in text mode from the command line.
 +
===R studio ===
 +
edit R source files in some text-editor and run it afterwards, or use ''rstudio''.
 +
you might also want to secure-copy files in your server share and run R-studio in a web browser: http://calc.vdc.ac:8787
 +
 
 +
===Python===
 +
some python-libs for finance have been installed on request.

Latest revision as of 13:34, 5 December 2019

The Calc server is used for remote computing. Local user accounts are provided therefore. calc.isor.univie.ac.at can be accessed in 2 ways.

Contents

[edit] 1 Functional Range

Use remote computing @calc for medium large operations. For small Operations use your laptop, for large ones Ivana's cluster. Coordinate with your colleagues, and use gkrellm to monitor system resources. (30% virtualisation-overhead might be indicated)

[edit] 2 Backup

Your data is your responsibility, since this server is not part of a BACKUP routine. Transfer your data (e.g. code and time-series) back onto your laptop or onto your share of our Institutsserver.)

[edit] 3 Access

[edit] 3.1 via Direct Access

[edit] 3.1.1 Prerequisites

  1. VPN client (no need within VLAN-168)
  2. ssh client
  3. X client

an X server is needed if graphics shall be displayed, staying in text mode you would not need it.

[edit] 3.1.2 work-flow

Your console (terminal) still controls the session, so if e.g. your laptop runs short on batteries, your calculation is interrupted and lost.

  • login at the remote host calc.isor.univie.ac.at
ssh -X <remote_user>@calc.isor.univie.ac.at

the first time you might want to check the host-keys:

a6:b2:e6:b2:69:79:03:2d:dc:a8:32:f3:9d:36:b1:e3   (ECDSA)
31:9a:05:c8:02:83:58:da:4e:3a:92:36:8c:89:29:c4   (RSA)
  • make your data available
    • either by running a script to connect your vladimir-data

(only if you have got an account at the institutsserver, i.e. being staff)

mount_vladimir <vladimir_user>
  • or some secure-copy transfers
scp -r <my_local_data> <remote_user>@calc.isor.univie.ac.at
  • start your calculations, e.g
matlab
  • transfer your outcome and delete your original data (if you don't use it any more)

or disconnect from vladimir

umount_vladimir

[edit] 3.2 via Virtual Desktop

caption

you can use a virtual desktop to login the calc server.

  1. F5 for connecting to the UNI-VPN
  2. vncviewer to connect to your Desktop

[edit] 3.3 via sftp and WEB-R

  1. F5 for connecting to the UNI-VPN
  2. sftp (e.g. FileZilla) to upload your workspace
  3. http://calc.vdc.ac:8787 to do your R

[edit] 3.3.1 Prerequisites

  • VPN client (can be omitted within VLAN-168)
  • vnc-client like tigervnc (former tight-vnc)
yum install tigervnc or apt-get install tigervnc-viewer
or similar viewers for windows, etc.

or

  • java enabled web-browser to run an unsigned applet (which normally causes troubles)

[edit] 3.3.2 work-flow

  1. Establish a VPN tunnel to begin with.
    Make sure to be within the VPN university subnet.
  2. start your vnc-client

(Technically, connecting through a virtual desktop another username/password pair would be necessary.) Your username is mapped to the port:=5900+<Display> number, your password is just the same anyway.)

vncviewer 131.130.97.100:port

or - even better tunnel the session through ssh

vncviewer -via <remote-user>@calc.isor.univie.ac.at localhost:port

Best to use the Full-Screen-Mode, note the keys how to escape, e.g. <Strg> + <Alt> + <Shift> + <F> Don't forget to close the vncviewer before opening it at another host to get the geometry-settings right. Some viewers like viagre disable sending special keys by default (<Strg>+<Q> in this case). Make sure to enable them, just not to get locked out in FullScreen mode.

If you use a java-enabled web-browser and allow an unsigned applet to run, calculate your Port := 5800+<Display>

http://calc.isor.univie.ac.at:Port

Use your Virtual Linux Desktop's terminal (e.g. gnome-terminal) and continue as described in 1). Start your calculation and close the viewer. Within the VPN uni-subnet or VLAN-168 you can re-open a viewer and continue.

[edit] 3.3.3 Bugs

Avoid switching to full-screen, because vnc might get into troubles.

[edit] 3.4 Applications

[edit] 3.4.1 Matlab

Open a terminal via e.g. Application > Favorites > Terminal. At the command-prompt put in matlab. After the licensing server is asked for authorization the GUI starts up. Don't close this terminal, since it's the controlling terminal for Matlab. Alternatively press <Alt>+<F2> and fill in matlab. You can also use matlab in text mode from the command line.

[edit] 3.4.2 R studio

edit R source files in some text-editor and run it afterwards, or use rstudio. you might also want to secure-copy files in your server share and run R-studio in a web browser: http://calc.vdc.ac:8787

[edit] 3.4.3 Python

some python-libs for finance have been installed on request.

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